PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 910177
Common NameARALYDRAFT_910177
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 214aa    MW: 23941 Da    PI: 4.5787
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
910177genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.5e-19555155
     AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            ++y+GVr +k +g+WvAeIr p++   r r++lg+f++ae+Aa+a +aa  +l+g
  910177  5 PKYTGVRKRK-WGKWVAEIRLPNS---RERIWLGSFDSAEKAARAFDAALYCLRG 55
            79*****999.**********933...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.52E-28565No hitNo description
PfamPF008478.6E-12555IPR001471AP2/ERF domain
PROSITE profilePS5103221.773663IPR001471AP2/ERF domain
SMARTSM003801.5E-31669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-29664IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-20664IPR016177DNA-binding domain
PRINTSPR003672.6E-9718IPR001471AP2/ERF domain
PRINTSPR003672.6E-92945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDASPKYTGV RKRKWGKWVA EIRLPNSRER IWLGSFDSAE KAARAFDAAL YCLRGPGARF  60
NFPENPPEIP GGRSLTPQQI QVVASRFACE EEHLPPEQHH PSSPRGDHKT EEEGIIPARG  120
GINSGSGGPT LGQVGEDNNN EGNSNSDTTS YWPFIWEEEN LVGPPNSDHE FGFFTDDSTN  180
LYFPTQHQLS SDFYYDGACE DDFSHYNINL WNF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1409770.0AC140977.1 Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete sequence.
GenBankAL5898830.0AL589883.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T6G21 (ESSA project).
GenBankAY5608660.0AY560866.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g21960) mRNA, complete cds.
GenBankBT0115770.0BT011577.1 Arabidopsis thaliana At5g21960 mRNA, complete cds.
GenBankBT0122430.0BT012243.1 Arabidopsis thaliana At5g21960 gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002874038.11e-159hypothetical protein ARALYDRAFT_910177
SwissprotQ9C5911e-144ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLD7M0S11e-159D7M0S1_ARALL; Putative uncharacterized protein
STRINGscaffold_602234.11e-158(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141671424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-120ERF family protein